ПУБЛИКАЦИИ

2022
    Ткачев С.Е. Бабкин И.В., Чичерина Г.С., Козлова И.В., Верхозина М.М., Демина Т.В., Джиоев Ю.П., Злобин В.И., Тикунова Н.В.
    Генетическое разнообразие и географическое распространение сибирского субтипа вируса клещевого энцефалита, В: Эволюция клещевого энцефалита (с момента открытия возбудителя по настоящее время) (под ред. Погодиной В.В., Ишмухаметова А.А.).
    Тверь, ООО "ТФП", 2021. С. 74-89.

    Джиоев Ю.П., Парамонов А.И., Козлова И.В., Ткачев С.Е. Демина Т.В., Верхозина М.М., Локтев В.Б., Букин Ю.С., Дорощенко Е.К., Лисак О.В., Сунцова О.В., Савинова Ю.С., Степаненко Л.А., Киселев Д.О., Злобин В.И.
    Реконструкция сайтов рекомбинации в геномах штаммов сибирского генотипа вируса клещевого энцефалита методами биоинформатики. В: Эволюция клещевого энцефалита (с момента открытия возбудителя по настоящее время) (под ред. Погодиной В.В., Ишмухаметова А.А.).
    Тверь, ООО "ТФП", 2021. С. 105-113.

    Dobler G, Tkachev S: General epidemiology of TBE. Chapter 11. In: Dobler G, Erber W, Bröker M, Schmitt HJ, eds.
    Rabies Virus at the Beginning of 21st Century (Tkachev S., ed.).
    The TBE Book. 5th ed. Singapore: Global Health Press; 2022. P. 142-154. 4)
    UK, IntechOpen. 2022. 81 p.
    doi: 10.5772/intechopen.80154

    Bondaryuk A.N., Andaev E.I., Dzhioev Y.P., Zlobin V.I., Tkachev S.E., Kozlova I.V., Bukin Y.S.
    Delimitation of the tick-borne flaviviruses.
    Resolving the tick-borne encephalitis virus and louping-ill virus paraphyletic taxa

    Mol Phylogenet Evol. 2022 169:107411.
    doi: 10.1016/j.ympev.2022.107411.

    Yoshida Y, Shaikhutdinov N, Kozlova O, Itoh M, Tagami M, Murata M, Nishiyori-Sueki H, Kojima-Ishiyama M, Noma S, Cherkasov A, Gazizova G, Nasibullina A, Deviatiiarov R, Shagimardanova E, Ryabova A, Yamaguchi K, Bino T, Shigenobu S, Tokumoto S, Miyata Y, Cornette R, Yamada TG, Funahashi A, Tomita M, Gusev O, Kikawada T.
    High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.
    NAR Genom Bioinform. 2022 Apr 5;4(2):lqac029.
    doi: 10.1093/nargab/lqac029. PMID: 35387384; PMCID: PMC8982440.

    Ananeva A, Nizamov S, Gaifullina R, Shagimardanova E.
    The novel HLA-DQB1 allele, HLA-DQB1*04:72, detected in a potential hematopoietic stem cell donor.
    HLA. 2022 May 11.
    doi: 10.1111/tan.14664. Epub ahead of print. PMID: 35546246.

    E. Shagimardanova, A. Ananeva, D. Klyuchnikov, R. Gaifullina, A. Andryushkina.
    Rare and very rare HLA alleles among bone marrow donors recruited by the National Bone Marrow Donor Registry named after Vasya Perevoshchikov, Russia. HLA, Volume 99, Issue 5 p.520

    Shvetsov BS, Minnekhanov AA, Emelyanov AV, Ilyasov AI, Grishchenko YV, Zanaveskin ML, Nesmelov AA, Streltsov DR, Patsaev TD, Vasiliev AL, Rylkov VV, Demin VA.
    Parylene-based memristive crossbar structures with multilevel resistive switching for neuromorphic computing. Nanotechnology.
    2022 Mar 30;33(25).
    doi: 10.1088/1361-6528/ac5cfe. PMID: 35276689.

    Kondratyeva SA, Voronina TA, Nesmelov AA, Miyata Y, Tokumoto S, Cornette R, Vorontsova MV, Kikawada T, Gusev OA, Shagimardanova EI.
    Intracellular Localization and Gene Expression Analysis Provides New Insights on LEA Proteins' Diversity in Anhydrobiotic Cell Line.
    Biology (Basel). 2022 Mar 22;11(4):487.
    doi: 10.3390/biology11040487. PMID: 35453687; PMCID: PMC9031878.

    Shaikhutdinov N, Gusev O.
    Chironomid midges (Diptera) provide insights into genome evolution in extreme environments.
    Curr Opin Insect Sci. 2022 Feb;49:101-107.
    doi: 10.1016/j.cois.2021.12.009. Epub 2022 Jan 3. PMID: 34990872.

    Miyata Y, Tokumoto S, Arai T, Shaikhutdinov N, Deviatiiarov R, Fuse H, Gogoleva N, Garushyants S, Cherkasov A, Ryabova A, Gazizova G, Cornette R, Shagimardanova E, Gusev O, Kikawada T.
    Identification of Genomic Safe Harbors in the Anhydrobiotic Cell Line, Pv11.
    Genes (Basel). 2022 Feb 24;13(3):406.
    doi: 10.3390/genes13030406. PMID: 35327960; PMCID: PMC8949610.

    Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium, Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH.
    Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
    Nat Commun. 2022 Mar 1;13(1):1200.
    doi: 10.1038/s41467-022-28758-y. Erratum for: Nat Commun. 2021 Jun 2;12(1):3297. PMID: 35232988; PMCID: PMC8888638.

    Dyshlyuk S, Vesnina AD, Dmitrieva AI, Kozlova OV, Prosekov AY.
    Optimization of parameters for obtaining callus, suspension, and root cultures of meadowsweet (filipendula ulmaria) to isolate the largest number of biologically active substances with geroprotective properties. Braz J Biol. 2022 Feb 21;84:e257074.
    doi: 10.1590/1519-6984.257074. PMID: 35195180.

    Lipachev N, Melnikova A, Fedosimova S, Arnst N, Kochneva A, Shaikhutdinov N, Dvoeglazova A, Titova A, Mavlikeev M, Aganov A, Osin Y, Kiyasov A, Paveliev M.
    Postnatal development of the microstructure of cortical GABAergic synapses and perineuronal nets requires sensory input. Neurosci Res. 2022 Jun 13:S0168-0102(22)00176-6.
    doi: 10.1016/j.neures.2022.06.005. Epub ahead of print. PMID: 35710035.

    Shagimardanova E, Ananeva A.
    The novel HLA-A*01:390 allele was identified in a Russian individual.
    HLA. 2022 Jan;99(1):34-36.
    doi: 10.1111/tan.14463. Epub 2021 Oct 27. PMID: 34676698.

    Shagimardanova E, Ananeva A, Andryushkina A.
    Identification of the new HLA-C*03 variant, HLA-C*03:563, by next generation sequencing.
    HLA. 2022 Jan;99(1):52-53.
    doi: 10.1111/tan.14455. Epub 2021 Oct 19. PMID: 34651459.

    Shagimardanova E, Ananeva A, Osipova N.
    Detection of the new HLA-DQB1*06:384 allele in a Russian individual.
    HLA. 2022 Jan;99(1):71-72.
    doi: 10.1111/tan.14440. Epub 2021 Oct 20. PMID: 34599860.

    Pudova DS, Toymentseva AA, Gogoleva NE, Shagimardanova EI, Mardanova AM, Sharipova MR. Comparative Genome Analysis of Two Bacillus pumilus Strains Producing High Level of Extracellular Hydrolases.
    Genes (Basel). 2022 Feb 24;13(3):409.
    doi: 10.3390/genes13030409. PMID: 35327964; PMCID: PMC8950961.

    Smirnov DN, Shekhovtsov SV, Shipova AA, Gazizova GR, Shagimardanova EI, Bulakhova NA, Meshcheryakova EN, Poluboyarova TV, Khrameeva EE, Peltek SE, Berman DI.
    De novo assembly and analysis of the transcriptome of the Siberian wood frog Rana amurensis.
    Vavilovskii Zhurnal Genet Selektsii. 2022 Feb;26(1):109-116.
    doi: 10.18699/VJGB-22-07. PMID: 35342853; PMCID: PMC8894097.

    Khilyas IV, Markelova MI, Valeeva LR, Gritseva AS, Sorokina AV, Shafigullina LT, Tukhbatova RI, Shagimardanova EI, Berkutova ES, Sharipova MR, Lochnit G, Cohen MF.
    Genomic and metabolomic profiling of endolithic Rhodococcus fascians strain S11 isolated from an arid serpentine environment.
    Arch Microbiol. 2022 May 19;204(6):336.
    doi: 10.1007/s00203-022-02955-1. PMID: 35587838.
    2021
    Adameyko KI, Burakov AV, Finoshin AD, Mikhailov KV, Kravchuk OI, Kozlova OS, Gornostaev NG, Cherkasov AV, Erokhov PA, Indeykina MI, Bugrova AE, Kononikhin AS, Moiseenko AV, Sokolova OS, Bonchuk AN, Zhegalova IV, Georgiev AA, Mikhailov VS, Gogoleva NE, Gazizova GR, Shagimardanova EI, Gusev OA, Lyupina YV.
    Conservative and Atypical Ferritins of Sponges
    Int J Mol Sci. 2021 Aug 11;22(16):8635.
    doi: 10.3390/ijms22168635. PMID: 34445356; PMCID: PMC8395497.


    Y. Akosah, M. Lutfullin, G. Lutfullina, D. Pudova, E. Shagimardanova, S. Vologin, N. Gogoleva, Z. Stasevski, M. Sharipova, A. Mardanova
    The potato rhizoplane actively recruits Fusarium taxa during flowering
    Rhizosphere. 2021. – V.20. - 100449.

    Balkin A.S., Plotnikov A.O., Gogoleva N.E., Gogolev Y.V., Demchenko K.N., Cherkasov S.V.
    Cappable-Seq reveals specific patterns of metabolism and virulence for Salmonella Typhimurium intracellular survival within Acanthamoeba castellanii
    International Journal of Molecular Sciences (IJMS). – 2021. – V. 22. – 9077.
    doi: 10.3390/ijms22169077

    Deviatiiarov, R., Ishikawa, K., Gazizova, G. et al.
    Integrative transcription start site analysis and physiological phenotyping reveal torpor-specific expression program in mouse skeletal muscle
    Commun Biol 4, 1290 (2021).
    doi: 10.1038/s42003-021-02819-2

    Gogoleva NE, Kataev VY, Balkin AS et al.
    Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation
    Data in Brief 2020; 31:106008

    Gorshkov V.; Tsers I., Islamov, B., Ageeva M., Gogoleva N., Mikshina P., Parfirova O., Gogoleva O., Petrova O., Gorshkova T., Gogolev Y.
    The Modification of Plant Cell Wall Polysaccharides in Potato Plants during Pectobacterium atrosepticum-Caused Infection
    Plants. – 2021. – Т. 10. – №. 7. – С. 1407.
    doi: 10.3390/plants10071407

    Gorshkov V.Y., Toporkova Y.Y., Tsers I.D., Smirnova E.O., Ogorodnikova A.V., Gogoleva N.E., Parfirova O.I., Petrova O.E., Gogolev Y.V.
    Differential modulation of the lipoxygenase cascade during typical and latent Pectobacterium atrosepticum infections
    Annals of Botany. – 2021. – mcab108.
    doi: 10.1093/aob/mcab108

    Grapotte M., Saraswat M., Bessière C., Menichelli C., Ramilowski J.A., Severin J., Hayashizaki Y., Itoh M., Tagami M., Murata M., Kojima-Ishiyama M., Noma S., Noguchi S., Kasukawa T., Hasegawa A., Suzuki H., Nishiyori-Sueki H., Frith M.C.; FANTOM consortium, Chatelain C., Carninci P., de Hoon M.J.L., Wasserman W.W., Bréhélin L., Lecellier C.H. Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
    Nat Commun. 2021 Jun 2;12(1):3297.
    doi: 10.1038/s41467-021-23143-7. PMID: 34078885; PMCID: PMC8172540.

    G. Hadieva, M. Lutfullin, D. Pudova, Y. Akosah, E. Shagimardanova, N. Gogoleva, M. Sharipova
    Supplementation of Bacillus subtilis GM5 enhances broiler body weight gain and modulates cecal microbiota
    3 Biotech. – 2021. – V.11:126. – P. 1-13.

    Kameneva P, Artemov AV, Kastriti ME, Faure L, Olsen TK, Otte J, Erickson A, Semsch B, Andersson ER, Ratz M, Frisén J, Tischler AS, de Krijger RR, Bouderlique T, Akkuratova N, Vorontsova M, Gusev O, Fried K, Sundström E, Mei S, Kogner P, Baryawno N, Kharchenko PV, Adameyko I.
    Single-cell transcriptomics of human embryos identifies multiple sympathoblast lineages with potential implications for neuroblastoma origin
    Nat Genet. 2021 May; 53(5):694-706.
    doi: 10.1038/s41588-021-00818-x. Epub 2021 Apr 8. PMID: 33833454; PMCID: PMC7610777.

    Kravchenko U., Gogoleva N., Kalubaka N., Kruk A., Diuba Y., Gogolev Y., Nikolaichik E.
    The PhoPQ Two-Component System Is the Major Regulator of Cell Surface Properties, Stress Responses and Plant-Derived Substrate Utilisation During Development of Pectobacterium versatile-Host Plant Pathosystems
    Front. Microbiol. – 2021. – V. 11. – 3596
    doi: 10.3389/fmicb.2020.621391

    Kravchuk, O.I., Burakov, A.V., Gornostaev, N.G. et al.
    Histone Deacetylases in the Process of Halisarca dujardini Cell Reaggregation
    Russ J Dev Biol 52, 319–333 (2021).
    doi: 10.1134/S1062360421050052

    Miyata Y, Fuse H, Tokumoto S, Hiki Y, Deviatiiarov R, Yoshida Y, Yamada TG, Cornette R, Gusev O, Shagimardanova E, Funahashi A, Kikawada T.
    Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells
    Sci Rep. 2021 Oct 5;11(1):19698.
    doi: 10.1038/s41598-021-98905-w. PMID: 34611198; PMCID: PMC8492635.

    Petrova O., Parfirova O., Gogolev Y., Gorshkov V.
    Stringent Response in Bacteria and Plants with Infection
    Phytopathology. 2021
    doi: 10.1094/PHYTO-11-20-0510-R

    Pintus S.S., Akberdin I.R., Yevshin I., Makhnovskii P., Tyapkina O., Nigmetzyanov I., Nurullin L., Devyatiyarov R., Shagimardanova E., Popov D., Kolpakov F.A., Gusev O., Gazizova G.R.
    Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle
    Biology (Basel). 2021 Jun 20;10(6):557.
    doi: 10.3390/biology10060557. PMID: 34203013; PMCID: PMC8235325.

    Popova, S.S., Yurshenas, D.A., Mikhailova, G.Z. et al.
    Stable Level of Giant Sarcomeric Cytoskeletal Proteins in Striated Muscles of the Edible Dormouse Glis glis during Hibernation
    J Evol Biochem Phys 57, 886–895 (2021).

    Subbot, A.; Kondratieva, S.; Novikov, I.; Gogoleva, N.; Kozlova, O.; Chebotar, I.; Gazizova, G.; Ryabova, A.; Vorontsova, M.; Kikawada, T.; Shagimardanova, E.; Gusev, O.
    Life-On-Hold: Lanthanoids Rapidly Induce a Reversible Ametabolic State in Mammalian Cells.
    Biology 2021, 10, 607.
    doi: 10.3390/biology10070607

    Tokumoto S, Miyata Y, Deviatiiarov R, Yamada TG, Hiki Y, Kozlova O, Yoshida Y, Cornette R, Funahashi A, Shagimardanova E, Gusev O, Kikawada T.
    Genome-Wide Role of HSF1 in Transcriptional Regulation of Desiccation Tolerance in the Anhydrobiotic Cell Line, Pv11
    Int J Mol Sci. 2021 May 28;22(11):5798.
    doi: 10.3390/ijms22115798. PMID: 34071490; PMCID: PMC8197945.

    Vladimir Gorshkov, Olga Parfirova, Olga Petrova, Natalia Gogoleva, Evgeny Kovtunov, Vladimir Vorob'ev and Yuri Gogolev.
    The Knockout of Enterobactin-Related Gene in Pectobacterium atrosepticum Results in Reduced Stress Resistance and Virulence towards the Primed Plants
    Int. J. Mol. Sci. 2021, 22(17), 9594
    doi: 10.3390/ijms22179594

    Yuzikhin O.S., Gogoleva N.E., Shaposhnikov A.I., Konnova T.A., Osipova E.V., Syrova D.S., Ermakova E.A., Shevchenko V.P., Nagaev Y.I., Shevchenko K.V., Myasoedov N.F., Safronova V.I., Shavarda A.L., Nizhnikov A.A., Belimov A.A., Gogolev Y.V.
    Rhizosphere Bacterium Rhodococcus sp. P1Y Metabolizes Abscisic Acid to Form Dehydrovomifoliol
    Biomolecules.

    2021. – V. 11. – 345.
    doi: 10.3390/biom11030345
    2020
    G.D. Ozhegov, A.S. Pavlova, D.E. Zhuravleva, N.E. Gogoleva, E.I. Shagimardanova, M.I. Markelova, D.R. Yarullina, A.R. Kayumov
    Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
    Data in Brief. – 2020. – V. 32. – 106105.

    Ziganshina E.E., Sagitov I.I., Akhmetova R.F., Saleeva G.T., Kiassov A.P., Gogoleva N.E., Shagimardanova E.I., Ziganshin A.M.
    Ziganshina E.E. Comparison of the microbiota and inorganic anion content in the saliva of patients with gastroesophageal reflux disease and gastroesophageal reflux disease-free individuals
    BioMed Research International. - 2020. - Vol. 2020 - Art. № 2681791.

    Kuznetsov MS, Lisukov AN, Rizvanov AA, Gusev OA et al.
    Bioinformatic Study of Transcriptome Changes in the Mice Lumbar Spinal Cord After the 30-Day Spaceflight and Subsequent 7-Day Readaptation on Earth: New Insights Into Molecular Mechanisms of the Hypogravity Motor Syndrome.
    Front Pharmacol. 2019;10:747. Published 2019 Jul 11. doi:10.3389/fphar.2019.00747

    Ryabova, A.; Kozlova, O.; Kadirov, A.; Ananeva, A.; Gusev, O.; Shagimardanova, E.
    DetR DB: A Database of Ionizing Radiation Resistance Determinants.
    Genes 2020, 11, 1477.

    Nikitin AG, Chudakova DA, Enikeev RF, Gusev OA, Shagimardanova EI, Shigapova LH et al.
    Lynch Syndrome Germline Mutations in Breast Cancer: Next Generation Sequencing Case-Control Study of 1,263 Participants.
    Front Oncol. 2020;10:666. Published 2020 May 29. doi:10.3389/fonc.2020.00666

    Avetisov SE, Abramova ND, Gogoleva NE, Gusev OA et al.
    Ratsional'naya strategiya izucheniya mikrobioma glaznoi poverkhnosti pol'zovatelei zhestkikh kontaktnykh linz metodom metabarkodinga po genu 16S rRNK [Rational strategy for studying microbiome of the ocular surface of people using hard contact lenses by method of 16S rRNA gene metabarcoding].
    Vestn Oftalmol. 2020;136(3):3-9. doi:10.17116/oftalma20201360313

    Adameyko KI, Kravchuk OI, Finoshin AD, Gusev OA et al.
    Structure of Neuroglobin from Cold-Water Sponge Halisarca dujardinii.
    Mol Biol (Mosk). 2020;54(3):474-479. doi:10.31857/S0026898420030039

    Finoshin AD, Adameyko KI, Mikhailov KV, Gusev OA, Shagimardanova EI et al.
    Correction: Iron metabolic pathways in the processes of sponge plasticity.
    PLoS One. 2020;15(3):e0230634. Published 2020 Mar 12. doi:10.1371/journal.pone.0230634

    Finoshin AD, Adameyko KI, Mikhailov KV, Gusev OA, Shagimardanova EI et al.
    Iron metabolic pathways in the processes of sponge plasticity [published correction appears in PLoS One.
    2020 Mar 12;15(3):e0230634]. PLoS One. 2020;15(2):e0228722. Published 2020 Feb 21. doi:10.1371/journal.pone.0228722

    Yamada TG, Hiki Y, Hiroi NF, Gusev OA, Shagimardanova EI et al.
    Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11. PLoS One. 2020;15(3):e0230218. Published 2020 Mar 19. doi:10.1371/journal.pone.0230218

    Makhnovskii PA, Zgoda VG, Bokov RO, Gusev OA, Shagimardanova EI, Gazizova GR et al.
    Regulation of Proteins in Human Skeletal Muscle: The Role of Transcription.
    Sci Rep. 2020;10(1):3514. Published 2020 Feb 26. doi:10.1038/s41598-020-60578-2

    Ziganshina EE, Sagitov II, Akhmetova RF, Shagimardanova EI, Gogoleva NE et al.
    Comparison of the Microbiota and Inorganic Anion Content in the Saliva of Patients with Gastroesophageal Reflux Disease and Gastroesophageal Reflux Disease-Free Individuals.
    Biomed Res Int. 2020;2020:2681791. Published 2020 May 13. doi:10.1155/2020/2681791

    Putlyaeva LV, Demin DE, Uvarova AN, Shagimardanova EI, Gazizova GR et al.
    PTPN11 Knockdown Prevents Changes in the Expression of Genes Controlling Cell Cycle, Chemotherapy Resistance, and Oncogene-Induced Senescence in Human Thyroid Cells Overexpressing BRAF V600E Oncogenic Protein.
    Biochemistry (Mosc). 2020;85(1):108-118. doi:10.1134/S0006297920010101

    Gogoleva NE, Konnova TA, Balkin AS, Plotnikov AO, Gogolev YV.
    Transcriptomic data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S treated with novobiocin.
    Data Brief. 2020;29:105297. Published 2020 Feb 17. doi:10.1016/j.dib.2020.105297

    Gogoleva NE, Konnova TA, Ismailov TT, Balkin AS, Belimov AA, Gogolev YV.
    Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W. Data Brief. 2019;28:105001. Published 2019 Dec 16. doi:10.1016/j.dib.2019.105001

    Sinkov VV, Ogarkov OB, Plotnikov AO, Gogoleva NE, et al.
    Metagenomic analysis of mycobacterial transrenal DNA in patients with HIV and tuberculosis coinfection. Infect Genet Evol. 2020;77:104057. doi:10.1016/j.meegid.2019.104057

    Smirnov D, Pikunov A, Syunyaev R, Deviatiiarov R, Gusev O, et al. (2020)
    Genetic algorithm-based personalized models of human cardiac action potential. PLOS ONE 15(5): e0231695. doi.org/10.1371/journal.pone.0231695

    Deviatiiarov, Ruslan, Rustam Ayupov, Alexander Laikov, Elena Shagimardanova, Takahiro Kikawada, and Oleg Gusev. 2020.
    "Diversity and Regulation of S-Adenosylmethionine Dependent Methyltransferases in the Anhydrobiotic Midge." Insects. https://doi.org/10.3390/insects11090634

    Tokumoto, Shoko, Yugo Miyata, Kengo Usui, Ruslan Deviatiialov, Takahiro Ohkawa, Sabina Kondratieva, Elena Shagimardanova, Oleg Gusev, Richard Cornette, Masayoshi Itoh, Yoshihide Hayashizaki, and Takahiro Kikawada 2020.
    Development of a Tet-On inducible expression system for the anhydrobiotic cell line, Pv11
    Insects. https://doi.org/10.3390/insects11110781.

    Voronina, T. A., Nesmelov, A. A., Kondratyeva, S. A., Deviatiiarov, R. M., Miyata, Y., Tokumoto, S., … Shagimardanova, E. I. (2020).
    New group of transmembrane proteins associated with desiccation tolerance in the anhydrobiotic midge Polypedilum vanderplanki.
    Scientific Reports, 10(1), 1–13. https://doi.org/10.1038/s41598-020-68330-6

    Zlotina A, Melnik O, Fomicheva Y, Skitchenko R, Sergushichev A, Shagimardanova E, Gusev O, Gazizova G, Loevets T, Vershinina T, Kozyrev I, Gordeev M, Vasichkina E, Pervunina T, Kostareva A. A
    300-kb microduplication of 7q36.3 in a patient with triphalangeal thumb-polysyndactyly syndrome combined with congenital heart disease and optic disc coloboma: a case report.

    BMC Med Genomics. 2020 Nov 20;13(1):175. doi: 10.1186/s12920-020-00821-x. PMID: 33218365; PMCID: PMC7678048.

    Efremova, L.N.; Strelnikova, S.R.; Gazizova, G.R.; Minkina, E.A.; Komakhin, R.A.
    A Synthetic Strong and Constitutive Promoter Derived from the Stellaria media pro-SmAMP1 and pro-SmAMP2 Promoters for Effective Transgene Expression in Plants.
    Genes 2020, 11, 1407.

    Sergei, B., Pavel, D., Aigul, G., Firyuza, B., Ilmira, N., Ilshat, M., Aida, A., Refat, K., Natalia, A., Elena, S., & Vera, G. (2020).
    Inhibition of FGFR2-Signaling Attenuates a Homology-Mediated DNA Repair in GIST and Sensitizes Them to DNA-Topoisomerase II Inhibitors.
    International journal of molecular sciences, 21(1), 352. https://doi.org/10.3390/ijms21010352

    Ryabova A, Cornette R, Cherkasov A, Watanabe M, Okuda T, Shagimardanova E, Kikawada T, Gusev O.
    Combined metabolome and transcriptome analysis reveals key components of complete desiccation tolerance in an anhydrobiotic insect.
    Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):19209-19220. doi: 10.1073/pnas.2003650117. Epub 2020 Jul 28. PMID: 32723826; PMCID: PMC7431039.

    Ananeva A., Leksina Y., Andryushkina A., Shagimardanova E
    Characterization of the new HLA allele HLA-A*25:68 by next-generation sequencing.
    HLA. - 2020. - V.96, Is.5, -.P 627-628

    Ananeva A. A novel HLA‐B allele, HLA‐B*44:493, detected in a potential hematopoietic stem cell donor // Ananeva A., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. - V.96, Is.6, -.P 730-732

    Ananeva A. The novel allele HLA-A*11:362 identified in two unrelated bone marrow donors from Russia // Ananeva A., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. Identification of the novel HLA‐DQB1, allele DQB1*06:02:44 by next‐generation sequencing// Ananeva A., Osipova N., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. Detection of the HLA‐B*51:322 allele in a Russian individual // Ananeva A., Osipova N., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. The novel HLA‐A*02:941 allele was identified during high‐resolution HLA typing // Ananeva A., Leksina Y., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. Characterization of the new HLA‐B*35:482, detected in a potential hematopoietic stem cell donor // Ananeva A., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A.Identification of three new HLA‐DQB1 alleles: HLA‐DQB1*03:02:33, ‐DQB1*04:79 and ‐DQB1*05:249// Ananeva A., Osipova N., Shaihutdinova A., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. Characterization of three new HLA‐A*11 alleles in Russian individuals by next generation sequencing // Ananeva A., Leksina Y., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. HLA‐A*02:934, identified in National bone marrow donor registry named after Vasya Perevoshchikov, Russian Federation // Ananeva A., Shaihutdinova A., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Ananeva A. Two novel HLA‐B variants identified in Russian individuals, HLA‐B*56:74 and ‐B*58:124 // Ananeva A., Leksina Y., Andryushkina A., Shagimardanova E. HLA. - 2020. In press

    Tokumoto S. Development of a Tet-On Inducible Expression System for the Anhydrobiotic Cell Line, Pv11 // Tokumoto S, Miyata Y., Usui K., Deviatiiarov R.,Ohkawa T.,Kondratieva S.,Shagimardanova E., Gusev O., Cornette R.,Itoh M., Hayashizaki Y., Kikawada T. Insects 2020, 11(11), 781

    Larskaya I. Stimulation of adventitious root formation by the oligosaccharin OSRG at the transcriptome level // Larskaya I., Gorshkov O., Mokshina N., Trofimova O., Mikshina P., Klepikova A., Gogoleva N., Gorshkova T. Plant Signal Behav. 2020;15(1):1703503.

    Gabbasova, E.L. Hereditary sensory motor polyneuropathy // E.L.Gabbasova, A.E. Komissarov, O.E. Agranovich, M.V. Savina, E.A. Kochenova, S.I. Trofimova, A.D. Slobodina, E. Shagimardanova, L. Shigapova, S.V. Sarantceva. Pediatric Traumatology, Orthopaedics and Reconstructive Surgery. -2020. -V.8. -I.3. -P.333-342

    Microbiota composition data of imago and larval stage of the anhydrobiotic midge // N. Shaikhutdinov, N. Gogoleva, O. Gusev, E. Shagimardanova. Data in Brief. -V. 33. December 2020, 106527

    Ryabova, A.; Kozlova, O.; Kadirov, A.; Ananeva, A.; Gusev, O.; Shagimardanova, E. DetR DB: A Database of Ionizing Radiation Resistance Determinants. Genes 2020, 11, 1477.

    Ozhegov, G.D. Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides / G.D. Ozhegov, A.S. Pavlova, D.E. Zhuravleva, N.E. Gogoleva, E.I. Shagimardanova, M.I. Markelova, D.R. Yarullina, A.R. Kayumov // Data in Brief. – 2020. – V. 32. – 106105.

    Zhuravleva D. E. Complete Genome Sequence of Lactobacillus hilgardii LMG 7934, Carrying the Gene Encoding for the Novel PII-Like Protein PotN / D.E. Zhuravleva , Z.I. Iskhakova, G.D. Ozhegov, N.E. Gogoleva, D.R. Khusnutdinova, E.I. Shagimardanova, K. Forchhammer, A.R. Kayumov //Current Microbiology. – 2020. – Vol. 77. – №. 11. – P. 3538-3545.

    Khilyas I. V. Genomic and phenotypic analysis of siderophore-producing Rhodococcus qingshengii strain S10 isolated from an arid weathered serpentine rock environment / I.V. Khilyas, A.V. Sorokina, M.I. Markelova, M. Belenikin, L. Shafigullina, R.I. Tukhbatova, E.I. Shagimardanova, J. Blom, M.R. Sharipova & M.F. Cohen // Archives of Microbiology. – 2020. – P. 1-6.
    2019
    Daniil V. Popov, Pavel A. Makhnovskii, Elena I. Shagimardanova, Guzel R. Gazizova, Evgeny A. Lysenko, Oleg A. Gusev,and Olga L. Vinogradova.
    Contractile activity-specific transcriptome response to acute endurance exercise and training in human skeletal muscle
    Am J Physiol Endocrinol Metab. 2019 Apr 1;316(4):E605-E614.

    Hadieva, G.F., Lutfullin, M.T., Pudova, D.S., Akosah, Y.A., Gogoleva, N.E., Shagimardanova E.I., Mardanova, A.M., Sharipova, M.R.
    Data on the genome analysis of the probiotic strain Bacillus subtilis GM5
    Data in Brief. Volume 23, April 2019, Номер статьи 103643

    Giliazeva, A.G., Shagimardanova, E.I. Shigapova, L.H., Pudova, D.S., Sharipova, M.R., Mardanova, A.M.
    Draft genome sequence and analysis of Klebsiella oxytoca strain NK-1 isolated from ureteral stent.
    Data in Brief Volume 24, June 2019, Номер статьи 103853

    Miyata, Y., Tokumoto, S., Sogame, Y., Deviatiiarov, R., Okada, J. Cornette, R., Gusev, O. Shagimardanova, E., Sakurai, M., Kikawada, T.
    Identification of a novel strong promoter from the anhydrobiotic midge, Polypedilum vanderplanki, with conserved function in various insect cell lines
    Scientific Reports Volume 9, Issue 1, 1 December 2019, Номер статьи 7004

    Shagimardanova, EI; Leksina, YA ; Gabidullina, RI; Lauterbach, N; Varda, N; Melista, E.
    Novel HLA alleles based on polymorphism outside the key exons as a result of full length NGS: what now?
    HLA V. 93 Issues 5 SI P. 390 Meeting abstract P223.

    Kuzmich, EV.; Makarenko, OA; Vavilov, MN; Shagimardanova, EI; Leksina, YA; Gaifullina, RF; Andryushkina, AV. Most common HLA alleles and five-locus haplotypes in national bone marrow donors registry named after Vasya Perevoshchikov, Russia.
    HLA V. 93 Issues 5 SI P. 356-357 Meeting abstract P143.

    Klyuchnikov DY, Vavilov MN, Trusova, LM ; Volchkov, SE; Tyumina, OV; Shagimardanova, EI; Leksina, YA; Suslova, TA.
    The most frequent Hla-A, -B and-DRB1 alleles in tatars from Chelyabinsk region, Samara region and Tatarstan.
    HLA V. 93 Issues 5 SI P. 349 Meeting abstract P126.

    Minnullina L, Pudova D, Shagimardanova E, Shigapova L, Sharipova M and Mardanova A (2019)
    Comparative Genome Analysis of Uropathogenic Morganella morganii Strains.
    Front. Cell. Infect. Microbiol. 9:167.

    Gordiev M, Brovkina O, Shigapova LH, Shagimardanova E, Enikeev R F, Nikitin A, Petkau V, Aksarin A, Ovchinnikova E, Sakaeva D.
    29P Heterozygous mutation in fanconi anemia genes associated with hereditary breast cancer
    Annals of Oncology, Volume 30, Issue Supplement_3, May 2019, mdz 095.028,

    Kuznetsov M. S., Rezvyakov P. N., Lisyukov A.N., Gusev O. A., Nikolskiy E.E., Islamov R. R.
    Bioinformatic Analysis of the Sciatic Nerve Transcriptomes of Mice after 30-Day Spaceflight on Board the Bion-M1 Biosatellite.
    Russian Journal of Genetics. March 2019, Volume 55, Issue 3, pp 388–392

    Kuznetsov M. S., Lisukov A.N., Rizvanov A. A., Tyapkina O.V., Gusev O.A., Rezvyakov P.N., Kozlovskaya I.B., Tomilovskaya E.S., Nikolskiy E.E., Islamov R.R.
    Bioinformatic Study of Transcriptome Changes in the Mice Lumbar Spinal Cord After the 30-Day Spaceflight and Subsequent 7-Day Readaptation on Earth: New Insights Into Molecular Mechanisms of the Hypogravity Motor Syndrome.
    Frontiers in Pharmacology. July 2019 V.10.

    Shagimardanova E, Shigapova L H, Nikitin A., Enikeev R F, Druzhkov M., Gusev O., Gordiev M.
    Evaluation of germ line mutational status among women with triple-negative breast cancer in Russia
    Annals of Oncology, Volume 30, Issue Supplement 5, Oct 2019.
    2018
    Mazin PV, Shagimardanova E, Kozlova O, Cherkasov A, Sutormin R, Stepanova VV, Stupnikov A, Logacheva M, Penin A, Sogame Y, Cornette R, Tokumoto S, Miyata Y, Kikawada T, Gelfand MS, Gusev O.
    Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki
    Proc Natl Acad Sci U S A. 2018 Mar 6; 115(10): E2477-E2486. doi: 10.1073/pnas.1719493115

    Yamada, T.G., Suetsugu, Y., Deviatiiarov, , R., Gusev, O.., Cornette R., Nesmelov, A., Hiroi, N., Kikawada, T. (2018). Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery.
    Scientific Reports, v.8, p.1-11.

    Ziganshina E.E., Mohammed W.S., Doijad S.P., Shagimardanova E.I., Gogoleva N.E., Ziganshin A.M.
    Draft genome sequence of Brevibacterium epidermidis EZ-K02 isolated from nitrocellulose-contaminated wastewater environments
    Data in Brief. - 2018. - Vol. 17. - P. 119-123.

    Shigapova L, Gordiev M, Druzkov M, Enikeev R, Nikitin A,Leksina Y, Gusev O, Shagimardanova E.
    Genetic predisposition to cancer due to germline mutations in DNA reparation-associated genes among Russian woman
    Human Genome Meeting 2018, Yokohama, Japan, 12-15 March 2018.- Human Genomics-2018.- Vol.-12(Suppl 1)

    Ziganshina E.E., Mohammed W.S., Doijad S.P., Shagimardanova E.I., Sigapova L.H., Ziganshin A.M.
    Draft genome sequence of Staphylococcus sp. EZ-P03 isolated from a mesophilic anaerobic digester
    BMC Research notes. - 2018. - Vol. 11. - p.694

    Schelkunov, MI; Penin, AA; Logacheva, MD.
    RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants.
    BMC Genomics. 2018 Aug 9;19(1):602. doi: 10.1186/s12864-018-4968-3.

    Speranskaya, AS; Khafizov, K; Ayginin, AA; Krinitsina, AA; Omelchenko, DO; Nilova, MV; Severova, EE; Samokhina, EN; Shipulin, GA; Logacheva, MD.
    Comparative analysis of Illumina and Ion Torrent high-throughput sequencing platforms for identification of plant components in herbal teas. Food Control
    Volume 93, November 2018, Pages 315-324

    Mohammed W.S., Ziganshina E.E., Shagimardanova E.I., Gogoleva N.E., Ziganshin A.M.
    Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae).
    Scientific Reportsvolume 8, Article number: 10073 (2018)

    Ziganshina E.E., Mohammed W.S., Doijad S.P., Shagimardanova E.I., Sigapova L.H., Ziganshin A.M.
    Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
    BMC Research notes. - 2018 Aug 22;11(1):606. doi: 10.1186/s13104-018-3710-1

    Brovkina O.I., Shigapova L., Chudakova D.A., Gordiev M.G., Enikeev R.F., Druzhkov M.O., Khodyrev D.S., Shagimardanova E.I., Nikitin A.G. and Gusev O.A. (2018)
    The Ethnic-Specific Spectrum of Germline Nucleotide Variants in DNA Damage Response and Repair Genes in Hereditary Breast and Ovarian Cancer Patients of Tatar Descent
    Front. Oncol. Vol. 8, Article 421 (1-9) doi: 10.3389/fonc.2018.00421

    Gazizova, G., Nigmetzyanov I., Tyapkina O., Deviatiiarov R., Gusev O.
    Promoter-level expression atlas of skeletal muscle atrophy and recovery.
    Human Genomics 2018, 12 (Suppl 1):9 P.23

    Gazizova, G., Deviatiiarov R., Nigmetzyanov, I., Forrest A., Deev R., Hayashizaki Y., Shagimardanova E., Gusev O. Promoter-level atlas of diversity of gene expression in the mammalian skeletal muscles: scope and milestones of the project
    Human Genomics 2018, 12 (Suppl 1):9 P.28

    Gorshkov V., Gubaev R., Petrova O., Daminova A., Gogoleva N., Ageeva M., Parfirova O., Prokchorchik M., Nikolaichik E., Gogolev Y.
    Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in Pectobacterium atrosepticum during systemic colonization of tobacco plants
    Eur J Plant Pathol. – 2018. – doi: 10.1007/s10658-018-1496-6

    Губаев Р.Ф., Горшков В.Ю., Гапа Л.М., Гоголева Н.Е., Ветчинкина Е.П., Гоголев Ю.В.
    Алгоритм для физиологической интерпретации данных транскриптомного профилирования немодельных организмов
    Молекулярная биология. – 2018. – Т. 52(4). – С. 576-590.

    Гоголева О.А., Корнева Ж.В., Гоголева Н.Е., Плотников А.О.
    Ультраструктурная организация нового галотолерантного штамма актинобактерии Kokuria sp. ICIS A2.2 при смене источника углерода
    Биология внутренних вод. – 2018. – №1. – С 1-8.

    Селиванова Е.А., Хлопко Ю.А., Гоголева Н.Е., Плотников А.О.
    Детекция потенциально патогенных бактерий в солоноватых реках приэльтонья методом высокопроизводительного секвенирования
    Журн. микробиол. эпидемиол. иммунол., 2018, №4, С. 87-95.

    Селиванова Е.А., Пошвина Д.В., Хлопко Ю.А., Гоголева Н.Е., Плотников А.О.
    РАЗНООБРАЗИЕ ПРОКАРИОТ В ПЛАНКТОННЫХ СООБЩЕСТВАХ СОЛЕНЫХ СОЛЬ-ИЛЕЦКИХ ОЗЕР (ОРЕНБУРГСКАЯ ОБЛАСТЬ)
    Микробиология , 2018, Т. 87, №4, 569-582

    Шевченко В.П., Нагаев И.Ю., Шапошников А.И. Шевченко К.В., Белимов А.А., Баташева С.Н., Гоголева Н.Е., Гоголев Ю.В., академик РАН Н.Ф.Мясоедов
    СИНТЕЗ И ТЕСТИРОВАНИЕ АБСЦИЗОВОЙ КИСЛОТЫ С ПРЕИМУЩЕСТВЕННЫМ ЗАМЕЩЕНИЕМ АТОМОВ ПРОТОНА НА АТОМЫ ТРИТИЯ В ЦИКЛОГЕКСЕНОВУЮ ЧАСТЬ МОЛЕКУЛЫ
    ДАН (Химия), 2018, Т.483 (1), 268-271

    Ryabova A., E. Shagimardanova, A. Cherkasov, S. Kuznetsova, T. Kikawada, O. Gusev (2018).
    Metabolic profiling of desiccation - rehydration cycle in anhydrobiotic chironomid Polypedilum vanderplanki
    FEBS Open Bio, 8: P.24-036, P.471.
    doi:10.1002/2211-5463.12453

    Cherkasov A., A. Ryabova, N. Battulin, A. Ananeva, O. Gusev, E. Shagimardanova (2018).
    Three-dimensional organization of genome of sleeping chironomid Polypedilum vanderplanki.
    FEBS Open Bio, 8: P.02-018, P.136. doi:10.1002/2211-5463.12453

    T. Ismailov, N. GogolevaI, A. Mironichewa, A. Balkin, A. Belimov, Y. Kovtunov, Y. GogolevI
    Transcriptome analysis of the Abscisic Acid Metabolizing Rhizobacteria
    The 43rd FEBS Congress, Prague, Czech Republic 7-12 July 2018. – P.24­035.FEBS Open Bio 8 (Suppl. S1) (2018) 107–496 DOI: 10.1002/2211-5463.12453

    A. Mironicheva1, N. Gogoleva, Y. Nikolaichik, Y. Khlopko, V. Safronova, T. Ermekkaliev, A. Belimov, Y. Gogolev
    Genetic and physiological characteristics of the abscisic acid metabolizing rhizobacteria
    FEBS Open Bio 8 (Suppl. S1) (2018) 107–496 DOI: 10.1002/2211-5463.12453

    Gerasimov, ES, Gasparyan, AA, Kaurov, I, Tichy, B; Logacheva, MD, Kolesnikov, AA, Lukes, J, Yurchenko, V, Zimmer, SL, Flegontov, P.
    Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.
    Nucleic Acids Res. 2018 V.46(2):765-781. doi: 10.1093/nar/gkx1202.